* Package: sci-physics/meep-1.3 * Repository: gentoo * Maintainer: sci-physics@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc examples guile hdf5 kernel_linux mpi userland_GNU * FEATURES: compressdebug installsources network-sandbox preserve-libs sandbox splitdebug test userpriv usersandbox >>> Unpacking source... >>> Unpacking meep-1.3.tar.gz to /var/tmp/portage/sci-physics/meep-1.3/work >>> Source unpacked in /var/tmp/portage/sci-physics/meep-1.3/work >>> Preparing source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ... * Applying meep-1.2-pc-no-ldflags.patch ... [ ok ] * Applying meep-1.2-no-auto-mpb.patch ... [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' ... * Running libtoolize --install --copy --force --automake ... [ ok ] * Running aclocal -I m4 ... [ ok ] * Running autoconf --force ... [ ok ] * Running autoheader ... [ ok ] * Running automake --add-missing --copy --foreign --force-missing ... [ ok ] * Running elibtoolize in: meep-1.3/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ... * econf: updating meep-1.3/config.sub with /usr/share/gnuconfig/config.sub * econf: updating meep-1.3/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/meep-1.3 --htmldir=/usr/share/doc/meep-1.3/html --libdir=/usr/lib64 --with-mpi --with-hdf5 --with-libctl configure: loading site script /usr/share/config.site checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-g++... none checking for mpic++... mpic++ checking for MPI_Init... yes checking for mpi.h... yes checking for extra flag needed to combine stdio.h and mpi.h... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-pc-linux-gnu-gcc... none checking for C++ compiler vendor... gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... gcc-nm checking the name lister (gcc-nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pc-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-pc-linux-gnu-ar... gcc-ar checking for archiver @FILE support... @ checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking for x86_64-pc-linux-gnu-ranlib... gcc-ranlib checking command to parse gcc-nm output from x86_64-pc-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-pc-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpic++ -E checking for ld used by mpic++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the mpic++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for mpic++ option to produce PIC... -fPIC -DPIC checking if mpic++ PIC flag -fPIC -DPIC works... yes checking if mpic++ static flag -static works... no checking if mpic++ supports -c -o file.o... yes checking if mpic++ supports -c -o file.o... (cached) yes checking whether the mpic++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for latex2html... no configure: WARNING: Cannot find latex2html in your path! checking for sin in -lm... yes checking for fftw_plan_dft_1d in -lfftw3... yes checking for x86_64-pc-linux-gnu-g77... no checking for x86_64-pc-linux-gnu-xlf... no checking for x86_64-pc-linux-gnu-f77... no checking for x86_64-pc-linux-gnu-frt... no checking for x86_64-pc-linux-gnu-pgf77... no checking for x86_64-pc-linux-gnu-cf77... no checking for x86_64-pc-linux-gnu-fort77... no checking for x86_64-pc-linux-gnu-fl32... no checking for x86_64-pc-linux-gnu-af77... no checking for x86_64-pc-linux-gnu-xlf90... no checking for x86_64-pc-linux-gnu-f90... no checking for x86_64-pc-linux-gnu-pgf90... no checking for x86_64-pc-linux-gnu-pghpf... no checking for x86_64-pc-linux-gnu-epcf90... no checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... no checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... no checking for sgemm_ in -lmkl... no checking for sgemm_... (cached) no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) no checking for sgemm_ in -lblas... (cached) no checking for pkg-config... /usr/bin/pkg-config checking for harminv >= 1.1... yes checking HARMINV_CFLAGS... checking HARMINV_LIBS... -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath checking mpb.h usability... no checking mpb.h presence... no checking for mpb.h... no checking for cblas_cgemm... no checking for cblas_cgemm in -lgslcblas... yes checking for gsl_sf_bessel_Jn in -lgsl... yes checking for deflate in -lz... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pset_mpi... no checking for H5Pset_fapl_mpio... no checking for mpirun... mpirun checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for scm_make_smob_type... yes checking for SCM_SMOB_PREDICATE... no checking for SCM_SMOB_DATA... no checking for SCM_NEWSMOB... no checking how to activate readline in Guile... ice-9 readline checking for libctl dir... /usr/share/libctl checking for gen-ctl-io... gen-ctl-io checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... yes checking ctl.h presence... yes checking for ctl.h... yes checking whether libctl version is at least 3.2.0... ok checking for libctl_quiet feature... yes checking for basename in -lgen... no checking for feenableexcept... yes checking whether feenableexcept declaration is usable... yes checking whether to catch and ignore SIGFPE signals... no checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for BSDgettimeofday... no checking for gettimeofday... yes checking for cblas_ddot... yes checking for cblas_daxpy... yes checking for jn... yes checking for C/C++ restrict keyword... __restrict checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating meep-pkgconfig config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating examples/Makefile config.status: creating libctl/Makefile config.status: creating libctl/meep.scm config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ... make -j4 -l10 make all-recursive make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' Making all in src make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make all-am make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o anisotropic_averaging.lo anisotropic_averaging.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bands.lo bands.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o boundaries.lo boundaries.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bicgstab.lo bicgstab.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c boundaries.cpp -o boundaries.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c bands.cpp -o bands.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c bicgstab.cpp -o bicgstab.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c anisotropic_averaging.cpp -o anisotropic_averaging.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o casimir.lo casimir.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o control_c.lo control_c.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c control_c.cpp -o control_c.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c casimir.cpp -o casimir.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o cw_fields.lo cw_fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c cw_fields.cpp -o cw_fields.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o dft.lo dft.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c dft.cpp -o dft.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o dft_ldos.lo dft_ldos.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c dft_ldos.cpp -o dft_ldos.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o energy_and_flux.lo energy_and_flux.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c energy_and_flux.cpp -o energy_and_flux.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o fields.lo fields.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o loop_in_chunks.lo loop_in_chunks.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c loop_in_chunks.cpp -o loop_in_chunks.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o grace.lo grace.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c fields.cpp -o fields.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c grace.cpp -o grace.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o h5fields.lo h5fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c h5fields.cpp -o h5fields.o grace.cpp: In destructor 'meep::grace::~grace()': grace.cpp:73:39: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] if (my_rank() == 0) system(gracecmd); ^ /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o h5file.lo h5file.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c h5file.cpp -o h5file.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o initialize.lo initialize.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o integrate.lo integrate.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c initialize.cpp -o initialize.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c integrate.cpp -o integrate.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o integrate2.lo integrate2.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c integrate2.cpp -o integrate2.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o monitor.lo monitor.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c monitor.cpp -o monitor.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o mympi.lo mympi.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o multilevel-atom.lo multilevel-atom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c mympi.cpp -o mympi.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c multilevel-atom.cpp -o multilevel-atom.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o near2far.lo near2far.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c near2far.cpp -o near2far.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o output_directory.lo output_directory.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c output_directory.cpp -o output_directory.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o random.lo random.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o sources.lo sources.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c random.cpp -o random.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c sources.cpp -o sources.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o step.lo step.cpp output_directory.cpp: In member function 'void meep::structure::set_output_directory(const char*)': output_directory.cpp:43:30: warning: ignoring return value of 'int symlink(const char*, const char*)', declared with attribute warn_unused_result [-Wunused-result] symlink(name, symlink_name); ^ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c step.cpp -o step.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o step_db.lo step_db.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c step_db.cpp -o step_db.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o stress.lo stress.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c stress.cpp -o stress.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o structure.lo structure.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o susceptibility.lo susceptibility.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c susceptibility.cpp -o susceptibility.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c structure.cpp -o structure.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o time.lo time.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o update_eh.lo update_eh.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c time.cpp -o time.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c update_eh.cpp -o update_eh.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o mpb.lo mpb.cpp /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o update_pols.lo update_pols.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c mpb.cpp -o mpb.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c update_pols.cpp -o update_pols.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o vec.lo vec.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c vec.cpp -o vec.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o step_generic.lo step_generic.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c step_generic.cpp -o step_generic.o /bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o step_generic_stride1.lo step_generic_stride1.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c step_generic_stride1.cpp -o step_generic_stride1.o mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o sphere-quad.o sphere-quad.cpp /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o sphere_quad sphere-quad.o -Wl,--as-needed -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -version-info 8:0:0 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o libmeep_mpi.la -rpath /usr/lib64 anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo control_c.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo grace.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo step_generic_stride1.lo -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: gcc-ar cru .libs/libmeep_mpi.a anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o control_c.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o loop_in_chunks.o grace.o h5fields.o h5file.o initialize.o integrate.o integrate2.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o step_generic_stride1.o libtool: link: gcc-ranlib .libs/libmeep_mpi.a libtool: link: ( cd ".libs" && rm -f "libmeep_mpi.la" && ln -s "../libmeep_mpi.la" "libmeep_mpi.la" ) make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' Making all in libctl make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make all-am make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; compiled /var/tmp/portage/sci-physics/meep-1.3/homedir/.cache/guile/ccache/2.0-LE-8-2.0/usr/share/libctl/base/include.scm.go mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o meep.o meep.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o structure.o structure.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o meep_wrap.o meep_wrap.cxx cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl meep_wrap.cxx: In function 'int SwigVector3_Check(SCM)': meep_wrap.cxx:1384:23: error: 'SCM_VECTORP' was not declared in this scope return SCM_VECTORP(o) && SCM_VECTOR_LENGTH(o) == 3; ^ meep_wrap.cxx:1384:47: error: 'SCM_VECTOR_LENGTH' was not declared in this scope return SCM_VECTORP(o) && SCM_VECTOR_LENGTH(o) == 3; ^ structure.cpp: In function 'meep::structure* make_structure(int, vector3, vector3, double, bool, double, int, bool, ctlio::geometric_object_list, ctlio::material_type_list, ctlio::material_type, const char*, ctlio::pml_list, ctlio::symmetry_list, int, double, double, double)': structure.cpp:1511:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] number no_size = 2.0 / ctl_get_number("infinity"); ^ mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o main.o main.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o geom.o geom.cpp main.cpp: In function 'void main_entry(void*, int, char**)': main.cpp:223:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] ctl_include(CTL_SCM); ^ main.cpp:249:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] ctl_include(SPEC_SCM); ^ mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o ctl-io.o ctl-io.cpp ctl-io.cpp: In function 'void ctlio::near2far_region_input(SCM, ctlio::near2far_region*)': ctl-io.cpp:31:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->center = vector3_object_property(so, "center"); ^ ctl-io.cpp:32:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->size = vector3_object_property(so, "size"); ^ ctl-io.cpp:33:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->direction = integer_object_property(so, "direction"); ^ ctl-io.cpp:34:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->weight = cnumber_object_property(so, "weight"); ^ ctl-io.cpp: In function 'void ctlio::force_region_input(SCM, ctlio::force_region*)': ctl-io.cpp:39:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->center = vector3_object_property(so, "center"); ^ ctl-io.cpp:40:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->size = vector3_object_property(so, "size"); ^ ctl-io.cpp:41:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->direction = integer_object_property(so, "direction"); ^ ctl-io.cpp:42:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->weight = cnumber_object_property(so, "weight"); ^ ctl-io.cpp: In function 'void ctlio::flux_region_input(SCM, ctlio::flux_region*)': ctl-io.cpp:47:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->center = vector3_object_property(so, "center"); ^ ctl-io.cpp:48:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->size = vector3_object_property(so, "size"); ^ ctl-io.cpp:49:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->direction = integer_object_property(so, "direction"); ^ ctl-io.cpp:50:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->weight = cnumber_object_property(so, "weight"); ^ ctl-io.cpp: In function 'void ctlio::eigenmode_source_input(SCM, ctlio::eigenmode_source*)': ctl-io.cpp:55:69: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_lattice_size = vector3_object_property(so, "eig-lattice-size"); ^ ctl-io.cpp:56:73: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_lattice_center = vector3_object_property(so, "eig-lattice-center"); ^ ctl-io.cpp:57:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->component = integer_object_property(so, "component"); ^ ctl-io.cpp:58:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->direction = integer_object_property(so, "direction"); ^ ctl-io.cpp:59:53: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_band = integer_object_property(so, "eig-band"); ^ ctl-io.cpp:60:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_kpoint = vector3_object_property(so, "eig-kpoint"); ^ ctl-io.cpp:61:67: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_match_freqp = boolean_object_property(so, "eig-match-freq?"); ^ ctl-io.cpp:62:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_parity = integer_object_property(so, "eig-parity"); ^ ctl-io.cpp:63:65: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_resolution = integer_object_property(so, "eig-resolution"); ^ ctl-io.cpp:64:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->eig_tolerance = number_object_property(so, "eig-tolerance"); ^ ctl-io.cpp: In function 'void ctlio::source_input(SCM, ctlio::source*)': ctl-io.cpp:69:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] src_time_input(object_object_property(so, "src"), &o->src); ^ ctl-io.cpp:70:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->component = integer_object_property(so, "component"); ^ ctl-io.cpp:71:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->center = vector3_object_property(so, "center"); ^ ctl-io.cpp:72:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->size = vector3_object_property(so, "size"); ^ ctl-io.cpp:73:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->amplitude = cnumber_object_property(so, "amplitude"); ^ ctl-io.cpp:74:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->amp_func = SCM_object_property(so, "amp-func"); ^ ctl-io.cpp:75:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("eigenmode-source", so)) { ^ ctl-io.cpp: In function 'void ctlio::custom_src_input(SCM, ctlio::custom_src*)': ctl-io.cpp:86:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->src_func = function_object_property(so, "src-func"); ^ ctl-io.cpp:87:56: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->start_time = number_object_property(so, "start-time"); ^ ctl-io.cpp:88:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->end_time = number_object_property(so, "end-time"); ^ ctl-io.cpp:89:47: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->swigval = SCM_object_property(so, "swigval"); ^ ctl-io.cpp: In function 'void ctlio::gaussian_src_input(SCM, ctlio::gaussian_src*)': ctl-io.cpp:94:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->frequency = number_object_property(so, "frequency"); ^ ctl-io.cpp:95:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->width = number_object_property(so, "width"); ^ ctl-io.cpp:96:56: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->start_time = number_object_property(so, "start-time"); ^ ctl-io.cpp:97:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->cutoff = number_object_property(so, "cutoff"); ^ ctl-io.cpp:98:47: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->swigval = SCM_object_property(so, "swigval"); ^ ctl-io.cpp: In function 'void ctlio::continuous_src_input(SCM, ctlio::continuous_src*)': ctl-io.cpp:103:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->frequency = number_object_property(so, "frequency"); ^ ctl-io.cpp:104:56: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->start_time = number_object_property(so, "start-time"); ^ ctl-io.cpp:105:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->end_time = number_object_property(so, "end-time"); ^ ctl-io.cpp:106:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->width = number_object_property(so, "width"); ^ ctl-io.cpp:107:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->cutoff = number_object_property(so, "cutoff"); ^ ctl-io.cpp:108:47: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->swigval = SCM_object_property(so, "swigval"); ^ ctl-io.cpp: In function 'void ctlio::src_time_input(SCM, ctlio::src_time*)': ctl-io.cpp:113:65: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->is_integratedp = boolean_object_property(so, "is-integrated?"); ^ ctl-io.cpp:114:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("custom-src", so)) { ^ ctl-io.cpp:119:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("gaussian-src", so)) { ^ ctl-io.cpp:124:47: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("continuous-src", so)) { ^ ctl-io.cpp: In function 'void ctlio::volume_class_input(SCM, ctlio::volume_class*)': ctl-io.cpp:135:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->center = vector3_object_property(so, "center"); ^ ctl-io.cpp:136:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->size = vector3_object_property(so, "size"); ^ ctl-io.cpp: In function 'void ctlio::pml_input(SCM, ctlio::pml*)': ctl-io.cpp:145:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->thickness = number_object_property(so, "thickness"); ^ ctl-io.cpp:146:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->direction = integer_object_property(so, "direction"); ^ ctl-io.cpp:147:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->side = integer_object_property(so, "side"); ^ ctl-io.cpp:148:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->strength = number_object_property(so, "strength"); ^ ctl-io.cpp:149:60: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->R_asymptotic = number_object_property(so, "R-asymptotic"); ^ ctl-io.cpp:150:60: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->mean_stretch = number_object_property(so, "mean-stretch"); ^ ctl-io.cpp:151:60: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->pml_profile = function_object_property(so, "pml-profile"); ^ ctl-io.cpp:152:36: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("absorber", so)) { ^ ctl-io.cpp: In function 'void ctlio::symmetry_input(SCM, ctlio::symmetry*)': ctl-io.cpp:175:55: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->direction = integer_object_property(so, "direction"); ^ ctl-io.cpp:176:47: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->phase = cnumber_object_property(so, "phase"); ^ ctl-io.cpp:177:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("mirror-sym", so)) { ^ ctl-io.cpp:182:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("rotate4-sym", so)) { ^ ctl-io.cpp:187:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("rotate2-sym", so)) { ^ ctl-io.cpp: In function 'void ctlio::lattice_input(SCM, ctlio::lattice*)': ctl-io.cpp:198:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->basis1 = vector3_object_property(so, "basis1"); ^ ctl-io.cpp:199:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->basis2 = vector3_object_property(so, "basis2"); ^ ctl-io.cpp:200:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->basis3 = vector3_object_property(so, "basis3"); ^ ctl-io.cpp:201:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->size = vector3_object_property(so, "size"); ^ ctl-io.cpp:202:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->basis_size = vector3_object_property(so, "basis-size"); ^ ctl-io.cpp:203:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->b1 = vector3_object_property(so, "b1"); ^ ctl-io.cpp:204:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->b2 = vector3_object_property(so, "b2"); ^ ctl-io.cpp:205:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->b3 = vector3_object_property(so, "b3"); ^ ctl-io.cpp:206:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->basis = matrix3x3_object_property(so, "basis"); ^ ctl-io.cpp:207:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->metric = matrix3x3_object_property(so, "metric"); ^ ctl-io.cpp: In function 'void ctlio::ellipsoid_input(SCM, ctlio::ellipsoid*)': ctl-io.cpp:212:71: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->inverse_semi_axes = vector3_object_property(so, "inverse-semi-axes"); ^ ctl-io.cpp: In function 'void ctlio::block_input(SCM, ctlio::block*)': ctl-io.cpp:217:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->e1 = vector3_object_property(so, "e1"); ^ ctl-io.cpp:218:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->e2 = vector3_object_property(so, "e2"); ^ ctl-io.cpp:219:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->e3 = vector3_object_property(so, "e3"); ^ ctl-io.cpp:220:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->size = vector3_object_property(so, "size"); ^ ctl-io.cpp:221:73: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->projection_matrix = matrix3x3_object_property(so, "projection-matrix"); ^ ctl-io.cpp:222:37: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("ellipsoid", so)) { ^ ctl-io.cpp: In function 'void ctlio::sphere_input(SCM, ctlio::sphere*)': ctl-io.cpp:233:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->radius = number_object_property(so, "radius"); ^ ctl-io.cpp: In function 'void ctlio::wedge_input(SCM, ctlio::wedge*)': ctl-io.cpp:238:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->wedge_angle = number_object_property(so, "wedge-angle"); ^ ctl-io.cpp:239:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->wedge_start = vector3_object_property(so, "wedge-start"); ^ ctl-io.cpp:240:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->e1 = vector3_object_property(so, "e1"); ^ ctl-io.cpp:241:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->e2 = vector3_object_property(so, "e2"); ^ ctl-io.cpp: In function 'void ctlio::cone_input(SCM, ctlio::cone*)': ctl-io.cpp:246:50: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->radius2 = number_object_property(so, "radius2"); ^ ctl-io.cpp: In function 'void ctlio::cylinder_input(SCM, ctlio::cylinder*)': ctl-io.cpp:251:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->axis = vector3_object_property(so, "axis"); ^ ctl-io.cpp:252:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->radius = number_object_property(so, "radius"); ^ ctl-io.cpp:253:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->height = number_object_property(so, "height"); ^ ctl-io.cpp:254:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("wedge", so)) { ^ ctl-io.cpp:259:37: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("cone", so)) { ^ ctl-io.cpp: In function 'void ctlio::compound_geometric_object_input(SCM, ctlio::compound_geometric_object*)': ctl-io.cpp:271:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] list lo_t = list_object_property(so, "component-objects"); ^ ctl-io.cpp: In function 'void ctlio::geometric_object_input(SCM, ctlio::geometric_object*)': ctl-io.cpp:283:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] material_type_input(object_object_property(so, "material"), &o->material); ^ ctl-io.cpp:284:49: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->center = vector3_object_property(so, "center"); ^ ctl-io.cpp:285:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("block", so)) { ^ ctl-io.cpp:290:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("sphere", so)) { ^ ctl-io.cpp:295:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("cylinder", so)) { ^ ctl-io.cpp:300:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("compound-geometric-object", so)) { ^ ctl-io.cpp: In function 'void ctlio::material_function_input(SCM, ctlio::material_function*)': ctl-io.cpp:311:64: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->material_func = function_object_property(so, "material-func"); ^ ctl-io.cpp: In function 'void ctlio::medium_input(SCM, ctlio::medium*)': ctl-io.cpp:320:61: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->epsilon_diag = vector3_object_property(so, "epsilon-diag"); ^ ctl-io.cpp:321:67: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->epsilon_offdiag = vector3_object_property(so, "epsilon-offdiag"); ^ ctl-io.cpp:322:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->mu_diag = vector3_object_property(so, "mu-diag"); ^ ctl-io.cpp:323:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->mu_offdiag = vector3_object_property(so, "mu-offdiag"); ^ ctl-io.cpp:325:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] list lo_t = list_object_property(so, "E-susceptibilities"); ^ ctl-io.cpp:334:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] list lo_t = list_object_property(so, "H-susceptibilities"); ^ ctl-io.cpp:342:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->E_chi2_diag = vector3_object_property(so, "E-chi2-diag"); ^ ctl-io.cpp:343:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->E_chi3_diag = vector3_object_property(so, "E-chi3-diag"); ^ ctl-io.cpp:344:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->H_chi2_diag = vector3_object_property(so, "H-chi2-diag"); ^ ctl-io.cpp:345:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->H_chi3_diag = vector3_object_property(so, "H-chi3-diag"); ^ ctl-io.cpp:346:75: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->D_conductivity_diag = vector3_object_property(so, "D-conductivity-diag"); ^ ctl-io.cpp:347:75: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->B_conductivity_diag = vector3_object_property(so, "B-conductivity-diag"); ^ ctl-io.cpp: In function 'void ctlio::noisy_drude_susceptibility_input(SCM, ctlio::noisy_drude_susceptibility*)': ctl-io.cpp:352:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->noise_amp = number_object_property(so, "noise-amp"); ^ ctl-io.cpp: In function 'void ctlio::noisy_lorentzian_susceptibility_input(SCM, ctlio::noisy_lorentzian_susceptibility*)': ctl-io.cpp:357:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->noise_amp = number_object_property(so, "noise-amp"); ^ ctl-io.cpp: In function 'void ctlio::drude_susceptibility_input(SCM, ctlio::drude_susceptibility*)': ctl-io.cpp:362:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->frequency = number_object_property(so, "frequency"); ^ ctl-io.cpp:363:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->gamma = number_object_property(so, "gamma"); ^ ctl-io.cpp:364:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("noisy-drude-susceptibility", so)) { ^ ctl-io.cpp: In function 'void ctlio::lorentzian_susceptibility_input(SCM, ctlio::lorentzian_susceptibility*)': ctl-io.cpp:375:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->frequency = number_object_property(so, "frequency"); ^ ctl-io.cpp:376:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->gamma = number_object_property(so, "gamma"); ^ ctl-io.cpp:377:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("noisy-lorentzian-susceptibility", so)) { ^ ctl-io.cpp: In function 'void ctlio::susceptibility_input(SCM, ctlio::susceptibility*)': ctl-io.cpp:388:63: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->sigma_offdiag = vector3_object_property(so, "sigma-offdiag"); ^ ctl-io.cpp:389:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] o->sigma_diag = vector3_object_property(so, "sigma-diag"); ^ ctl-io.cpp:390:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("drude-susceptibility", so)) { ^ ctl-io.cpp:395:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("lorentzian-susceptibility", so)) { ^ ctl-io.cpp: In function 'void ctlio::material_type_input(SCM, ctlio::material_type*)': ctl-io.cpp:406:45: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] if (object_is_member("material-function", so)) { ^ ctl-io.cpp:411:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("perfect-metal", so)) { ^ ctl-io.cpp:416:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] else if (object_is_member("medium", so)) { ^ ctl-io.cpp: In function 'scm_unused_struct* ctlio::read_input_vars()': ctl-io.cpp:1490:57: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] epsilon_input_file = ctl_get_string("epsilon-input-file"); ^ ctl-io.cpp:1491:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] dimensions = ctl_get_integer("dimensions"); ^ ctl-io.cpp:1492:54: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] material_type_input(ctl_get_object("default-material"), &default_material); ^ ctl-io.cpp:1493:52: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] geometry_center = ctl_get_vector3("geometry-center"); ^ ctl-io.cpp:1494:48: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lattice_input(ctl_get_object("geometry-lattice"), &geometry_lattice); ^ ctl-io.cpp:1496:36: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] list lo_t = ctl_get_list("geometry"); ^ ctl-io.cpp:1504:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] ensure_periodicity = ctl_get_boolean("ensure-periodicity"); ^ make[3]: *** [Makefile:528: meep_wrap.o] Error 1 make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make[2]: *** [Makefile:400: all] Error 2 make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make[1]: *** [Makefile:491: all-recursive] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' make: *** [Makefile:400: all] Error 2 * ERROR: sci-physics/meep-1.3::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-physics/meep-1.3::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-physics/meep-1.3::gentoo'`. * The complete build log is located at '/var/log/portage/build/sci-physics/meep-1.3:20170827-023022.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/meep-1.3/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-physics/meep-1.3/temp/environment'. * Working directory: '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' * S: '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'  * Package: sci-physics/meep-1.3  * Repository: gentoo  * Maintainer: sci-physics@gentoo.org  * USE: abi_x86_64 amd64 elibc_glibc examples guile hdf5 kernel_linux mpi userland_GNU  * FEATURES: compressdebug installsources network-sandbox preserve-libs sandbox splitdebug test userpriv usersandbox >>> Compiling source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ... make -j4 -l10 make all-recursive make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' Making all in src make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make all-am make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' Making all in libctl make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make all-am make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o meep_wrap.o meep_wrap.cxx In file included from /usr/include/guile/2.0/libguile.h:126:0, from meep_wrap.cxx:730: meep_wrap.cxx: In function 'int SwigVector3_Check(SCM)': /usr/include/guile/2.0/libguile/deprecated.h:475:32: warning: 'int scm_i_vectorp(SCM)' is deprecated [-Wdeprecated-declarations] #define SCM_VECTORP(x) scm_i_vectorp(x) ^ meep_wrap.cxx:1384:10: note: in expansion of macro 'SCM_VECTORP' return SCM_VECTORP(o) && SCM_VECTOR_LENGTH(o) == 3; ^~~~~~~~~~~ /usr/include/guile/2.0/libguile/deprecated.h:467:20: note: declared here SCM_DEPRECATED int scm_i_vectorp (SCM x); ^~~~~~~~~~~~~ /usr/include/guile/2.0/libguile/deprecated.h:475:47: warning: 'int scm_i_vectorp(SCM)' is deprecated [-Wdeprecated-declarations] #define SCM_VECTORP(x) scm_i_vectorp(x) ^ meep_wrap.cxx:1384:10: note: in expansion of macro 'SCM_VECTORP' return SCM_VECTORP(o) && SCM_VECTOR_LENGTH(o) == 3; ^~~~~~~~~~~ /usr/include/guile/2.0/libguile/deprecated.h:467:20: note: declared here SCM_DEPRECATED int scm_i_vectorp (SCM x); ^~~~~~~~~~~~~ /usr/include/guile/2.0/libguile/deprecated.h:476:32: warning: 'long unsigned int scm_i_vector_length(SCM)' is deprecated [-Wdeprecated-declarations] #define SCM_VECTOR_LENGTH(x) scm_i_vector_length(x) ^ meep_wrap.cxx:1384:28: note: in expansion of macro 'SCM_VECTOR_LENGTH' return SCM_VECTORP(o) && SCM_VECTOR_LENGTH(o) == 3; ^~~~~~~~~~~~~~~~~ /usr/include/guile/2.0/libguile/deprecated.h:468:30: note: declared here SCM_DEPRECATED unsigned long scm_i_vector_length (SCM x); ^~~~~~~~~~~~~~~~~~~ /usr/include/guile/2.0/libguile/deprecated.h:476:53: warning: 'long unsigned int scm_i_vector_length(SCM)' is deprecated [-Wdeprecated-declarations] #define SCM_VECTOR_LENGTH(x) scm_i_vector_length(x) ^ meep_wrap.cxx:1384:28: note: in expansion of macro 'SCM_VECTOR_LENGTH' return SCM_VECTORP(o) && SCM_VECTOR_LENGTH(o) == 3; ^~~~~~~~~~~~~~~~~ /usr/include/guile/2.0/libguile/deprecated.h:468:30: note: declared here SCM_DEPRECATED unsigned long scm_i_vector_length (SCM x); ^~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o meep_mpi meep.o structure.o meep_wrap.o main.o geom.o ctl-io.o ../src/libmeep_mpi.la -lctl -lguile-2.0 -lgc -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o meep_mpi meep.o structure.o meep_wrap.o main.o geom.o ctl-io.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lctl -lguile-2.0 -lgc -L/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lhdf5 -lz /usr/lib64/libgsl.so /usr/lib64/libgslcblas.so /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' Making all in tests make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' Making all in examples make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/examples' make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' cp -f ./meep-pkgconfig meep_mpi.pc make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' >>> Source compiled. >>> Test phase: sci-physics/meep-1.3 make -j4 -l10 -C tests pml CXXFLAGS=-O0 make: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -O0 -c -o pml.o pml.cpp /bin/sh ../libtool --tag=CXX --mode=link mpic++ -O0 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o pml pml.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -O0 -Wl,-O1 -Wl,--hash-style=gnu -o pml pml.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm make: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' make -j4 -l10 check Making check in src make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make check-am make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src' Making check in libctl make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make check-am make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl' Making check in tests make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o aniso_disp.o aniso_disp.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bench.o bench.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bragg_transmission.o bragg_transmission.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o convergence_cyl_waveguide.o convergence_cyl_waveguide.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o cylindrical.o cylindrical.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o flux.o flux.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o harmonics.o harmonics.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o integrate.o integrate.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o known_results.o known_results.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o near2far.o near2far.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o one_dimensional.o one_dimensional.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o physical.o physical.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o stress_tensor.o stress_tensor.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o symmetry.o symmetry.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o three_d.o three_d.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o two_dimensional.o two_dimensional.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o 2D_convergence.o 2D_convergence.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o h5test.o h5test.cpp make[2]: 'pml' is up to date. /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o aniso_disp aniso_disp.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o bench bench.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o bragg_transmission bragg_transmission.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o aniso_disp aniso_disp.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o convergence_cyl_waveguide convergence_cyl_waveguide.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o cylindrical cylindrical.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o bragg_transmission bragg_transmission.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o bench bench.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o flux flux.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o convergence_cyl_waveguide convergence_cyl_waveguide.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o harmonics harmonics.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o integrate integrate.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o cylindrical cylindrical.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o known_results known_results.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o flux flux.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o harmonics harmonics.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o near2far near2far.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o one_dimensional one_dimensional.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o integrate integrate.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o physical physical.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o known_results known_results.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o near2far near2far.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o stress_tensor stress_tensor.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o one_dimensional one_dimensional.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o symmetry symmetry.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o physical physical.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o three_d three_d.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o two_dimensional two_dimensional.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o stress_tensor stress_tensor.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o symmetry symmetry.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o 2D_convergence 2D_convergence.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o three_d three_d.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm /bin/sh ../libtool --tag=CXX --mode=link mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o h5test h5test.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath -lfftw3 -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o two_dimensional two_dimensional.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o 2D_convergence 2D_convergence.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o h5test h5test.o -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' make check-TESTS make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests' PASS: aniso_disp PASS: bragg_transmission PASS: convergence_cyl_waveguide PASS: bench PASS: flux PASS: cylindrical PASS: known_results PASS: integrate PASS: one_dimensional